As expected, I've been fixing things all morning. I was kinda dreading this morning, but it's been okay. Started out with problems right off the start. I had saved all the projects and committed all the resources. The name on the file said something along "Project A.Published". However, a project isn't really "published" until you go to Collaborate->Publish->All Information. Ha ha. Talk about a basic mistake!
The rest of the morning has been about small things and philosophical debates on project names. On my "administration" project, I had to enter "tasks" like vacation, sick, personal, etc. I somehow assumed that the MS Project Server would have some automatic function to account for such universal blocks of time. Actually, I think they might, but evidently our IT department handles it like tasks on a project. And since I already had an administration project, it was no big deal.
If nothing else, I figure having "converted department to MS Project" will look good on my resume. I'm a fairly pleased woman right now.